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Options for the {@link RendereName.SEQUENCE} and {@link RendereName.SEQUENCE_PAIR} renderers.

Hierarchy

Index

Properties

annotationStyles?: AnnotationStyle[]

Annotation style.

colorLetters?: boolean

Whether the residues letters should be colored as opposed to the background.

Color scheme.

comparativeCharacterScheme?: SequenceComparativeCharacterSchemeType

Comparative character scheme.

comparativeColorScheme?: SequenceComparativeColorSchemeType

Comparative color scheme.

displayAnnotation?: boolean

Whether annotation should be displayed.

displaySequence?: boolean

Whether the sequence should be displayed.

displayTranslatedSequence?: boolean

Whether the translated sequence should be displayed.

motifs?: ColorMotif[]

List of colored sequence motifs.

residueWidth?: number

User defined residue width.

The style.

threeLetter?: boolean

Whether the residues should be displayed as three-letter codes.

translateColorScheme?: SequenceColorSchemeType

Color scheme for the translated protein sequence.

translateDirection?: "forward" | "reverse"

Direction of translation.

translateFrame?: number

Frame offset for translation.

translateSequenceType?: DNA | RNA

The type of sequence.

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